PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032318001
Common NameGSBRNA2T00032318001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 508aa    MW: 55903.4 Da    PI: 10.0923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00032318001  82 FVCEICNKGFQRDQNLQLHRRGH 104
                          89*******************88 PP

2zf-C2H2157e-05159181123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  GSBRNA2T00032318001 159 FKCEKCSKKYAVQSDWKAHAKTC 181
                          89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-781104No hitNo description
Gene3DG3DSA:3.30.160.601.7E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94982104IPR007087Zinc finger, C2H2
SMARTSM003550.01782104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035573124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-7154179No hitNo description
SMARTSM0035592159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MQMIPGDPFS ISSSMGGFVH QEQHLHHLQQ HIQDINPNSN PNPNAKPNSS SAKKKRNQPG  60
TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIK  120
KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKFK CEKCSKKYAV QSDWKAHAKT  180
CGTREYKCDC GTLFSRKDSF ITHRAFCDAL TEEGARMSSL SNNSAISTTT MTTNLNFGND  240
SHVMNNPNLP HGFVHRGVHH PDINAAISQF GLGFGNDLTG MHPQGLSEMV QMTSSGNHHL  300
FPLSSSSVLP VFSGHHHNQQ FQIPTSSTNP NFTLSSSSTS QQTSASLPSL QQQHQTPKDS  360
SFSPLFSSSC ETKQNKPLSP MSATALLQKA AQMGSTRSNS TTAPSIFAGP TMTSSSSAAS  420
HPPPRSSSPV MIQQQLNNNF NTNVPRDTHN SVENNYRFQS NRSSTNPVQQ MGLTRDFLGV  480
SNEHHPHQTG HRPFLPQELA RFAPSSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606415.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_013606416.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D20.0IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A078FBM80.0A0A078FBM8_BRANA; BnaCnng03050D protein
STRINGBra009549.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]